Dynamic chromosome breakpoints !!!
...ldquo;chromosomal breakpoints” refers to these places where they break. Mostly, this process occurs with a high degree of accuracy at high frequency in both eukaryotic and prokar...3551 days ago
Computer simulation of genetic mechanism !!
...loid populations. http://www.ebi.ac.uk/projects/bargen FIGG FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size an...2974 days ago
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Genome Assembly Tools and Software - PART2 !!
...p;(Viral Spectrum Assembling) implements a novel viral assembling and frequency estimation methods. This soft...sembling based on maximum-bandwidth paths in weighted read graphs and frequency estimation via Expectation Ma...2684 days ago
Awesome perl frameworks, libraries and software - PART 3
...mple tower defense game in Perl clintongormley/ElasticSearchX-Autocomplete - ElasticSearchX::Autocomplete is a Perl module which gives you frequency (and optionally geolocation)-...2493 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...dels, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency of the CG sequence is higher...3824 days ago
Apps for Busy Bioinformatics Researchers !!!
...oss of heterozygosity (LOH) events Quickly find variants of interest by filtering variants based on associated genes, functional impact, allele frequency in data sets, and cross-refer...3540 days ago
Conserved Domain Database (CDD) version 3.11 released
...Updates to the Conserved Domain Database include: Position-specific score matrices (PSSMs) have been recomputed for many models in CDD, and frequency tables have been added to the...3726 days ago
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Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the len...2916 days ago
Calculate Dinucleotide Frequency with Perl
#!/usr/bin/perl -w use strict; my ($genome, $head, $tail); my (%mono_nt, %di_nt); $/ = ">"; open my $fasta, '2337 days ago
Comment on "Calling variants in non-diploid systems"
...erial or viral) genomes, but we do not know exactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls as well a...1043 days ago
Comment on "Nanopolis: polish a genome assembly"
....results -P 8 \ nanopolish variants --consensus -o polished.{1}.vcf -w {1} -r reads.fa -b reads.sorted.bam -g draft.fa -t 4 --min-candidate-frequency 0.1 nanopolish vcf2fasta -g...2098 days ago