Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2151 days ago
Biological Sequence handling with Perl !
...UAU => 'Y',UAC => 'Y',UAA => '*',UAG => '*', UGU => 'C',UGC => 'C',UGA => '*',UGG => 'W',...'H',CAC => 'H',CAA => 'Q',CAG => 'Q', CGA => 'R',CGG => 'R',CGC => 'R',CGU => 'R',...2178 days ago
Perl script to find coding regions in DNA sequences
...es: high values (positive) for coding protein sequences and low values (zero or even negative) for intronic regions. exon.fa >HUMHBB.2ex GCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCT...2152 days ago
2148 days ago
Perl script to find the distance beetween all the contigs and scaffolds
...$sequences{$seqid}{seq} .= $line; $sequences{$seqid}{len} += length $line; $sequences{$seqid}{gc} += ($line =~ tr/gcGC/gcGC/); $line...2137 days ago
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2096 days ago
Perl script to find palindromic pattern !
...ntf "%s%s at %d\n", ' 'x($p1-$pals), substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__ AGAGGTCAGTCTGCATCGTATCGATCGTCGACGATCGATACGATGCAGACTGACGAGAG2096 days ago
Installing Busco version 4.0.6
...00 611 KB conda-forge gcc_impl_linux-64-7.3.0 | habb00fd_1 73.2 MB gcc_linux-64-7.3.0 |...3.8 MB conda-forge r-mgcv-1.8_31 | r36...4::findutils-4.6.0-h14c3975_1000 gcc_impl_linux-64 pkgs/main/lin...1450 days ago