Ancient whole genome duplication (WGD) detection tools !
...g software BLASTMCLMUSCLE/MAFFT/PRANKPAMLPhyML/FastTreei-ADHoRe But the good news is that most of the so...nment, and then start the analysis Step 1 : Use to wgd mclidentify homologous genes in the genome wgd...1158 days ago
Frequently used bioinformatics tools for viral genome analysis !
...assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA,...). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al....1050 days ago
Bioinformatics tools for telomere to telomere assembly !
...uracy (Arang Rhie)● PanGenie – algorithm that leverages a pangeno...tama (Transcriptome Annotation by Modular Algorithms) – software desig...ns. (Kristoffer Sahlin @krsahlin)● LeafGo – workflow to rapi...995 days ago
Illumina based assembly pipeline steps !
...CFTools, BEDTools; default for metagenomics data) Variant annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment, mutati...880 days ago
Useful Bioinformatics Analysis Tools !
...KMC Memory frugal k-mer counter. • Kokot, M., Długosz, M., Deorowicz, S., KM...a collection of genomes. • Deorowicz, S., Gudys, A., Dlugosz, M., Kokot, M., Danek, A.,&...866 days ago
List of comparative genomics resources !
...- COnserved Non-coDing Orthologous Regions A database resourc...of microorganisms based on oligopeptide content of their compl...sity measurements among homologous sequences from the Mammalia...similarity plots. The ERGO -- Genome analysis and discov...680 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...arton, N. H., Briggs, D. E. G., Eisen, J. A., Goldstein, D. B., & Patel, N...olecular approach to the study of genic heterozygosity in natural populations. I.... 1975. Energy and Evolution. University of Chicago, Department of Biology. 3...680 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...ess friendly: https://ccl.northwestern.edu/netlogo/models/Mimicry Camouflage pr...ication/natural-selection-and-camouflage/ (NetLogo also has one: https://ccl.n...licatorMutatorDynamicsWithThreeStrategies/ NetLogo: http://ccl.northwestern.edu...680 days ago
635 days ago
Useful link to teach evolution !
...ess friendly: https://ccl.northwestern.edu/netlogo/models/Mimicry Camouflage pr...ication/natural-selection-and-camouflage/ (NetLogo also has one: https://ccl.n...licatorMutatorDynamicsWithThreeStrategies/ NetLogo: http://ccl.northwestern.edu...581 days ago