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Protocol for De novo Genome Assembly using Illumina Reads
...f.spbau.ru/quastMauve assembly metrics - http://code.google.com/p/ngopt/wiki/How_To_Score_Genome_Assemblies_with_MauveInGAP-SV - https://sites.google.com/site/nextgengenomics/ingap and http://ingap.sourceforge....1217 days ago
Bioinformatics software for biologists in the genomics era
...nal and translational inferences. However, the majority of the scientists at the forefront of experimental research are not bioinformaticians, so a gap exists between the user-frien...3799 days ago
3021 days ago
Applied Statistics for Bioinformatics using R
...test biological hypotheses. The book intends to be introductory in explaining and programming elementary statistical concepts, thereby bridging the gap between high school levels an...2088 days ago
Genome Assembly Tools and Software - PART2 !!
...deal simulated assembly of super contigs. GapFiller – Closing the Gap within Paired ReadsGapFiller&...for constructing the string graph. MindTheGap 1.0.0 – Detection and A...better assembled repetitive regions, less gaps and higher accuracy for the...2698 days ago
Bioinformatics in Africa: Part5 - Nigeria
...otechnology Workshops (WABW) to develop an agenda to address the bioinformatics skills gap among scientists&nb...1196 days ago
Genome Assembly Tools and Software - PART1 !!
...llelized Genome Assembler There is a growing gap between the output of new gen...pCol 1.1.1 – Haplotype Assembly from Long Gapless Reads A fast and memor...broken assembly based on the error calls. GapFiller 1.10 – Close Gaps...2698 days ago
2258 days ago
Research Associate & Traineeship Positions at CSIR-IHBT Palampur
...ect entitled “Establishment of Bioinformatics i nfrastructure facility for biology teaching through bioinformatics (BIF-BTBI) under the BTISnet [GAP-0145]” Position: Resear...3487 days ago
Bioinformatics Engineer -- Algorithm Development
...ety of tasks ranging from new product development to DNA data processing • Collaborate with Centrillion research scientists in order to bridge the gap between the laboratory and th...3334 days ago
Needleman-Wunsch Algorithm in Perl
...ent algo (GOTHO 1982 mod) # usage statement die "usage: $0 \n" unless @ARGV == 4; # get sequences, matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring sc...2918 days ago
Installing Porechop on Ubuntu !
...oring_scheme SCORING_SCHEME Comma-delimited string of alignment scores: match, mismatch, gap open, gap extend (default: 3,-6,-5,-2)...2119 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Toward almost closed genomes with GapFiller". There are also some tools like GAPresolution that can help to perform local re-assembl...Tags: Gap, filling, Contigs, extensions, tools
2178 days ago
Comment on "Basic command-line to run BLAST"
...ferent parameters that can be adjusted to customize the search. The most important parameters include the e-value threshold, the word size, and the gap penalties. Perform the s...436 days ago
1533 days ago