Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for imp...read sequencing data to genotype a wide spectrum of genetic variation (Tobias Marschal...mplicon targets from genomic samples to cluster and generate h...989 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the...nalysis Step 1 : Use to wgd mclidentify homologous genes in the genome wgd mcl -n...the corresponding anchor point wgd syn --feature gene --gen...1152 days ago
List of comparative genomics resources !
...dbEST (database of expressed gene sequences) libraries and remo...ntional and microRNA encoding genes conserved between mouse and...lysis on fragmented microbial genetic material. SnoopCGH --...UniGene Find mapping and expression information for a unigene clu...674 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Ba...ons - Fundamental Theorem. Genetic Variation 1a. Lewontin, R...of Drosophila pseudoobscura. Genetics 27: 363-394. Recombina...s within chromosome sections. Genetics 118: 445-459. 2. Boyl...by Environment Interactions. Genetics....674 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius...abiologist.asu.edu/peppered-moths-game/play.html General resources The always popu...https://cbs.umn.edu/populus/overview Drift & Gene Flow...674 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius...abiologist.asu.edu/peppered-moths-game/play.html General resources The always popu...https://cbs.umn.edu/populus/overview Drift & Gene Flow...574 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Ba...ons - Fundamental Theorem. Genetic Variation 1a. Lewontin, R...of Drosophila pseudoobscura. Genetics 27: 363-394. Recombina...s within chromosome sections. Genetics 118: 445-459. 2. Boyl...by Environment Interactions. Genetics....574 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org/...541 days ago
Common steps for reads mapping !
...Mapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general steps to follow for mapping read...420 days ago
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