Results for "Genome"
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Sample bandage input file for visual analysis
Sample bandage input file for visual analysis ...Tags: bandage, assembly, genome, visual, analysis, file, input
1209 days ago
- KAD is designed for evaluating the accuracy of nucleotide base quality of genome assemblies. Briefly, abundance of k-mers are quantified for both sequencing reads and assembly sequences. Comparison of the two values results in a single value per k-mer, K-mer Abundance Difference (KAD), which indi...
Tags: KAD, Assessing, genome, assemblies, K-mer, assemblies, abundance, Illumina, reads
1409 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality reference. Merqury provides a set of tools for this ...Tags: merqury, Evaluate, genome, assemblies, k-mers
1395 days ago
- We have developed the Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome. We envisage its use during annotation jamborees, genome comparison and for use by developers for rapid feedback during annotation software deve...
Tags: Sequence, Ontology, Bioinformatics, Analysis, SOBA, tool, statistical, graphical, summary, annotated, genome
1376 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs.io/en/latest/index.html 3 Miniasm assembler https://github.com/lh3/miniasm 4 PBJelly scaffolding tool https://...Tags: List, bioinformatics, tools, Software, Website, References, genome, assembly
1337 days ago
- We are a bioinformatics research lab focused on developing novel methods and using them to study genome evolution, organization, and regulation. Our mission is to decode biomedical knowledge that is missed without rigorous statistical approaches. http://docpollard.org/ Tools http://docpo...
Tags: Katie, Pollard, Bioinformatics, method, genome, regulation, stats
1311 days ago
- Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary and secondary contigs are not properly identified,...
Tags: HapSolo, optimization, approach, remove, secondary, haplotigs, diploid, genome, assembly, scaffolding
1280 days ago
- In the Svardal lab they are interested how the astonishing natural diversity we see on earth came into being, by which forces it formed and how it is changing today. Hence, they are trying to understand the process of evolution, with mathematical models and through the analysis of genome sequenci...
Tags: adaptation, genome, evolutionm pattern, Svaedal, nature, fish, cichlid
1163 days ago
