Results for "Genome Sequence"
Comments
Comment on "Short-read assembly using Spades !"
...is the process of constructing a genome sequence from a large number of shor...ng reads. SPAdes (St. Petersburg genome assembler) is a popular softw...he directory where the assembled genome will be saved, "forward_reads...ss and accuracy of the assembled genome by comparing it to reference ge...414 days ago
Comment on "Sibelia: A comparative genomics tool"
...ng: 1. Seq_id -- ID of the sequence, that the instance belongs to...f the same synteny block. Genomes permutations ----------------...ur exactly once in each input sequence. This option assumes that all input genomes contain single chromosome....1283 days ago
- ... Find regex in reference sequence and show matches as an addi...sp; setGenome fasta|bam|genome &n...nbsp; Set genome and reference sequence. ...
1519 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draf...2fasta -g draft.fa polished.*.vcf > polished_genome.fa2098 days ago
- ...ls for quality control of the sequence data generated using Illumina...pects of RNA-Seq experiments: sequence quality, sequencing depth, st...s, read distribution over the genome structure and coverage uniformi...alization can be performed by genome browsers like UCSC, IGB and IGV...
2136 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...l be built from the reference sequence and used for mapping. Output SAM alignments will be in genome space (not transcriptome). -K,...reference files contain same sequences, and outputs lenient seconda...erence sequence is a circular genome. [false] -F, --ambiguity FLT Al...2291 days ago
- ...s really useful. I am dealing with new genome, with priliminary annotations...lly accepted. Once I tried to convert the ids/sequence by matching online database...y way to check gene enrichments study for new genomes? Is there any posibility to up...
2633 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
A Fugu–Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes http://nar.oxfordjournals.org/content/32/8/2618.short3194 days ago
Comment on "Software packages for next gen sequence analysis"
Genome assemblies tool and related papers at http://www.plosone.org/browse/Sequence+assembly+tools?startPage=53&a...rmattedQuery=*%3A*&sortKey=&filterSubjects=Sequence%20assembly%20tools&volume...3241 days ago
Comment on "Does anyone have Nanopore latest updates?"
...re has been little information lately - rumors have indicated that the sequence quality has not been satisf...Oxford Nanopore CTO Clive Brown will give a keynote address at the UK Genome Science meeting 2013 (Sept 2-4)...3914 days ago
