Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoal...ps://sourceforge.net/projects/trowel-ec/ Metagenomics Assembly-free phylogenomic...ncing reads Software (Python) http://jordan.biology.gatech.edu/page/software/stri...2385 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&nb...es, e.g. in disease studies Insufficient for studying heterogeneous systems...2365 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome bu...2346 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages&mdash...he gamut from full-blown web frameworks and content management systems to APIs for web services, development tools, testing systems...2336 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'B...eperl -lne '(1x$_) !~ /^1?$|^(11+?)\1+$/ && print "$_ is prime"' # Print...rint join ".", map { (($ip>>8*($_))&0x...h a regular expressionperl -ne '!/regex/ &&a...2316 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematic...ation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet...) into standardized diagrams (Systems Biology Graphical Notation Process De...ks, metabolic networks and ecosystems http://visant.bu.edu/  ...2302 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one...2295 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysi...as over 11 years experience in molecular biology...ation sequencing based testing, clinical genomics, and personalized medicine f...Suman holds a Ph.D in Molecular and Cell Biology from Indian Institute of Scie...2278 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between...T-REX / 3.22 HGT detection / download & c...ZLE / 5.3.rc16 HGT detection / download & c...864 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to...Mobi) Building Machine Learning Systems with Python - Willi Richert & Luis Pedro Coelho, Packt.&nbs...thon - Allen B. Downey (2.x & 3.0) Intermediate Python&n...n In-Depth Guide (2.6 - 2.x & 3...2269 days ago