Results for "GitHub"
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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...e reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github.io/papers/401851.full.pdf1159 days ago
Janggu - Deep learning for Genomics
Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE cases https://github.com/wkopp/janggu_usecases1152 days ago
Public Databases for Bioinformatics !
...fork example in python: (for more detailed examples look at https://github.com/nboley/grit/ grit/lib/mul...e case 2 we used the set of narrowPeak files summarized in https://github.com/wkopp/janggu_usecases/tre...1152 days ago
- ...ublic collection to which noone else can contribute. Biocode is a curated repository of general-use utility scripts. Algorithms scripts @ https://github.com/jschendel/bioinformatics-...
3678 days ago
- ...is configured for WGS data; there is an exome branch configured for variant calling in exome data.To run the pipeline you will need Rubra: https://github.com/bjpop/rubra. Rubra uses t...
3666 days ago
Java utilities for Next Generation Sequencing by Pierre Lindenbaum
Java utilities for Bioinformatics https://github.com/lindenb/jvarkit3533 days ago
A simple tutorial for a complex ComplexHeatmap
ComplexHeatmap (Gu, Eils, and Schlesner (2016)) is an R Programming Language (R Core Team (2020)) package that is currently listed in the Bioconductor pa...1142 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scal...1109 days ago
- A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot
3028 days ago
- ...indel or block substitution events Gap filling Identification of local misassemblies, including optional opening of new gaps More at https://github.com/broadinstitute/pilon/wiki...
3022 days ago
