Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda insta...-blast-2.7.1+-win64.exe with your web browser. #If that FTP links does not work, try HTTP instead http://ftp....1163 days ago
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Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) us...uals in the population my $popsize = 1024; # a good star...pulation array reference # from this point on, we are working with a new generation in $...2388 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English;...~ tr/ACGTUYRSWMKDVHBXN-/TGCAARYSWKMHBDVXN-/; # work on m...n - $lEnd); ## Only continue on if there's a good likelihood that this will work ## i.e. trimLength * (1-...2325 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into...LE_THRESHOLD] [--extra_middle_trim_good_side EXTRA_MIDDLE_TRIM_GOOD_SIDE...(default: 85.0) --extra_middle_trim_good...2122 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, do...make && make install #Notice the prefix option, it is mandatory for this to work. The value of prefix option i...2114 days ago
2092 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to...ou wanted to trim any number of duplicates down to a single letter, this would work: $string =~ s/(.)\1+/$1/gi1567 days ago
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