Results for "Graph Theory"
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Awesome perl frameworks, libraries and software - PART 1
...ing MySQL servers rizen/Facebook-Graph - A perl module to help...e the intricacies of the Facebook Graph API. lhost/sendxmpp - p...files for use with Learning Perl theory/uri-db - Perl module re...bsp;- MRTG - Multi Router Traffic Grapher monitoring-plugins/monitori...2499 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was...use 4 threads max memory is 32Gb use 3 kmer values to build the de bruijn graph(...
2361 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph...2340 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a...k and complex system, dynamic and hierarchical graph. https://gephi.org Igraph Collection of network analys...nd import external data http://tinyurl.com/yEdGraph/...2298 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving analysis protocols, test...on of results: ABySS Explorer Interactive Java application that uses a novel graph-...2293 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford...brc.jp/alignment/software/tips.html Omega | Overlap-graph de novo Assembler for Metagen...sensitive mapping of nanopore sequencing reads with GraphM...2251 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its strengths and...embler for large genomes that uses de Bruijn graphs. Velvet: Another de Bruijn graph-based assembler optimized for...al genome assembly. wtdbg2: A de Bruijn graph...296 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the...ar mitochondrial DNA sequences (numts). IDBA-UD: IDBA-UD (Iterative De Bruijn Graph...252 days ago
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