2863 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput shor...2679 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args....2638 days ago
Awesome perl frameworks, libraries and software - PART 1
...nter briandfoy/PerlPowerTools - Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf&n...ok miyagawa/xml-atom - XML::Atom perl module jric/epubtohtml - A simple perl script t...2483 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...y values Software (C++) http://www.dei.unipd.it/~ciompin/main/qcluster.html Reads error correction Ligh...k-words) R package http://www-rcf.usc.edu/~fsun/Programs/NGS-MC/NGS-MC.html Species identification/taxon...2365 days ago
Single Cell RNAseq data analysis tutorial !!
...Cell RNA-Seq Profiling Analysis https://research.cchmc.org/pbge/sincera.html SC3 – consensus cluste...Control Single-cell RNA-seq Data Quality http://www.morgridge.net/SinQC.html TSCAN: Pseudo-time reconstru...2344 days ago
2344 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several ho...2325 days ago
Bioinformatics Web Application Development with Perl
...and the simple development style that represented seem clunky. Web pages have become web applications. Development has moved from generating static HTML to both client and server sid...2315 days ago
PerlOneLiner for Bioinformatician
...ingperl -MURI::Escape -le 'print uri_escape($string)' # URL-unescape a stringperl -MURI::Escape -le 'print uri_unescape($string)' # HTML-encode a stringperl -MHTML::Entities -le 'print encode_e...2296 days ago