2882 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput shor...2699 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args....2657 days ago
Awesome perl frameworks, libraries and software - PART 1
...werTools - Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf&n...utomatically unburden $HOME from caches, etc. Useful for $HOME on SSDs, sma...nbsp;- XML::Atom perl module jric/epubtohtml - A simple perl script t...2502 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalign...C++) http://www.dei.unipd.it/~ciompin/main/qcluster.html Reads error correction Ligh...http://www-rcf.usc.edu/~fsun/Programs/NGS-MC/NGS-MC.html...2384 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widel...ng Analysis https://research.cchmc.org/pbge/sincera.html SC3 – consensus cluste...RNA-seq Data Quality http://www.morgridge.net/SinQC.html...2364 days ago
2364 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several ho...2345 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages—the precursor...ages have become web applications. Development has moved from generating static HTML...2335 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ ....unescape a stringperl -MURI::Escape -le 'print uri_unescape($string)' # HTML-encode a stringperl -MHTML...2315 days ago