Results for "Hierarchical"
Bookmarks
Bioinformatics Algorithm Demonstrations and Tutorials
...ithms demonstrated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogene...3698 days ago
- ...bility. Networks offer a new perspective of organism organization through elements acquired by horizontal gene transfers and not constricted by hierarchical structures. More at htt...
2761 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will appl...ined contigs, using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA
2708 days ago
- ...mat given single-end reads, aligns reads to reference sequence(s). All of these analyses will be shown with Krona program, which allows to show hierarchical data with pie charts.
2706 days ago
- Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support f...
2595 days ago
Mobyle: a new full web bioinformatics framework
...rmatics analyses. It embeds simple yet powerful data management features that allow the user to reproduce analyses and to combine tools using a hierarchical typing system. Mobyle offers...2303 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...xes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). ...2183 days ago
- ...terozygosity (≥3%), which can be difficult for other tools. This pipeline also implements flexible and sensitive assembly error detection, a hierarchical scaffolding procedure and a r...
2041 days ago
iSeqQC: a tool for expression-based quality control in RNA sequencing
...e to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering, agglomerative hierarchical clustering and correlation co...1534 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...g bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also produces KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks...1426 days ago
