HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper:...2271 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two con...2229 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that...2057 days ago
Heatmapper: web-enabled heat mapping for all
...d heat maps from transcriptomic, proteomic and metabolomic experiments; 2) pairwise distance maps; 3) correlation maps; 4) image overlay heat maps; 5) ...2035 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows...1992 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
...s with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike other...1979 days ago
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gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1726 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this w...1636 days ago