jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacB...fluctuations. jackalope can simulate single, paired-end, or mate-pair Illumina reads, as well as reads from...1759 days ago
1609 days ago
De novo Genome Assembly for Illumina Data
Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the proces...1580 days ago
HASLR: a tool for rapid genome assembly of long sequencing reads
...generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation Sequencing reads (such as Illumina) from the same sample.1569 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memor...1565 days ago
Musket - a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum appr...1565 days ago
QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. We compared QuorUM against several published error corrector...1565 days ago
1562 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
...eful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls...1462 days ago
1429 days ago