Results for "Image data analysis"
Bio-Scripts
Bash command to install bwa, samtools, picard !
(base) [wsu29@bladeamd-2 tmp]$ conda install bwa Collecting package metadata (repodata.json): done Solving environmen...## environment location: /data/sata_data/workshop/wsu29/anac...amtools Collecting package metadata (repodata.json): done Solvin...picard Collecting package metadata (re...1570 days ago
Bash command to install GATK, Bedtools and SnpEff !
(my_GATK) [wsu29@bladeamd-2 tmp]$ conda install gatk Collecting package metadata (repodata.json): done Solving environm...a727_0 193 KB r-gdata-2.18.0 | r36h6...nsi-0.4.0-r36h96ca727_0 r-gdata pkgs/r/noarch::r-g...################# | 100% r-gdata-2.1...1570 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo...checking for local ICUDT_DIR... icu61/data checking for gcc... gcc -std...set... no checking for available ICU data library (ucnv, uloc, utrans)....6_64-linux-gnu -licui18n -licuuc -licudata -L/...1564 days ago
- (my_GATK) [wsu29@bladeamd-2 testGATK]$ conda update -n base -c defaults conda Collecting package metadata (current_repodata.jso...
1561 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the..., | grep SRR | head -$N > selected.txt # Store the data in...1557 days ago
- $MT:~/Downloads/cgr-perl$ sudo apt-get install gnuplot [sudo] pa...led: aglfn gnuplot gnuplot-data gnuplot-qt libdouble-conversi...bionic/universe amd64 gnuplot-data all 5.2.2+dfsg1-2ubuntu1 [56....-conversion1:amd64. (Reading database ... 189871 files and dire...sg-3) ... Setting up gnuplot-data (5....
1556 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
$MT:~/Downloads/chaos$ sudo apt-get install python-numpy python-...ecorator python-matplotlib-data python-olefile python-pil pyt...-matplotlib python-matplotlib-data python-numpy python-olefile p...verse amd64 python-matplotlib-data all 2.1.1-2ubuntu3 [3,774 kB]...ted package python-matplotlib-data. P...1556 days ago
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd runc Readi...context Manage contexts engine Manage the docker engine image Manage images...1528 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own execut...ibgetopt-argvfile-perl. (Reading database ... 193749 files and dire...e field that involves the design, analysis, and interpretation of data for studies in public health...structural variants in sequencing data using genome-wide local assembly....1526 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-...ODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS INT...a-2.8-py37_0 ... installing: imagesize-1.1.0-py37_0 ... instal..... installing: importlib_metadata-0.8-py37_0 ... installing: j...37h7918eee_0 ... installing: imageio-...1526 days ago
