Results for "Install"
Bio-Scripts
Conda command to install checkV
(mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Collecting package metada...Total: 25.9 MB The following NEW packages will be INSTALLED: biopython co...644 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...he required modules have been installed in the system and download...my ($inst) = ExtUtils::Installed->new(); my (@installed...tabase for Alienomics\n"; #Install NCBI taxdump my $url = 'ftp:...=> 'third_party_DB/' ); #Install diamondDB __END__ # B...1169 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve....
1157 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1063 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with i...
1063 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1063 days ago
- ...ollowing NEW packages will be installed: autoconf automake autop...1g-dev 0 upgraded, 106 newly installed, 0 to remove and 0 not upgr...les and directories currently installed.) Preparing to unpack .../...... Processing triggers for install-info (6.5.0.dfsg.1-2) ... Pr...
1063 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environment: done...1063 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1063 days ago
Bash script to check installed bioinformatics program !
...if [ $? -ne 0 ] then echo " $name not installed :: Try installing $name with conda first"...fi done if [[ $decFlag -ne 0 ]] then echo "Install all the missing sotware first...1055 days ago
