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Results for "J-Circos"

Blogs

• • Jit@jit.aber

  

  Installing Perl GD Module

  In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH)...

  3935 days ago

Bookmarks

• • Jit@jit.aber

  

  RCircos: an R package for Circos 2D track plots

  RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulat...

  2902 days ago

• • Jit@jit.aber

  

  CIRCOS Visualize !!

  Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data valu...

  2797 days ago

• +6 more Bookmarks

Top-level pages

• • Jitendra Narayan@admin

  

  Genomics for Bioinformatician

  Genomics is the study of the genomes of organisms. The field includes intensive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping...

  3938 days ago

Wire posts

• • Abhimanyu Singh@abhimanyu

  

  Circos like image with R circlize package https://cran.r-project.org/web/packages/circlize/vignettes/visualize_relations_by_chord_diagram.pdf #R #Circlize #Plot #Circos

  2795 days ago

• • Jit@jit.aber

  

  #SynCircos draws the interactive #Circos plot by using selected species and chromosomes. http://bioinfo.konkuk.ac.kr/GMASS/htdocs/syncircos.php #Synteny

  1732 days ago

• +5 more Wire posts

Bio-Scripts

• • Rahul Nayak@rahul

  

  Circos with circosJS

  let width = $(window).width() - 20, height = $(window).height() - 20 let svg = d3.select("body") .append...

  1520 days ago

• • Jit@jit.aber

  

  Install quast using conda !

  (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version...

  1211 days ago

• +1 more Bio-Scripts

Tags

• • Shruti Paniwala@shruti

  

  J-Circos

  Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom in/out functions. J-Circos uses the Java computer ...

  Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos

  2629 days ago

Comments

• • BioStar@biostar

  

  Comment on "Tools to detect synteny blocks regions among multiple genomes"

  Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting...

  419 days ago

• • BioStar@biostar

  

  Comment on "Sibelia: A comparative genomics tool"

  Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable o...

  1280 days ago

• +1 more Comments