Software packages for next gen sequence analysis
...uery sequence. C++ source. * ELAND - Efficient Large-Scale Alignment of Nucleotide...ersatile software tool for efficiently solving large scale sequence matching tasks...is specifically optimized for the analysis of large numbers (millions) of high-th...3245 days ago
Comprehensive list of visualization tools for biological pathways
...pathway visualization tool for complex high-throughput data http://www.g-language.org/data/marray/ MapMan User-driven tool that displays large datasets onto diagrams of met...2289 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s, small sample DNA-Seq workflows, large sample DNA-seq analysis, RNA-...ysis REST and Python API to mange large projects. Vari...tify SNPs, MNPs, short indels, and larger variants; has been tested on...etation LARVA Description: Large-scale Analysis of Variants in...2911 days ago
Tools for Searching Repeats And Palindromic Sequences
...cally found at the centromeres and telomeres of chromosomes these are duplications of more complex 100-200 base sequences.Segmental Duplications - Large blocks of 10-300 kilobases wh...2213 days ago
Genome Assembly Tools and Software - PART1 !!
...and Butterfly, applied sequentially to process large volumes of RNA-Seq reads. Tri...er has enabled discovery in microbial genomes, large eukaryotic genomes, diploid g...pulation assembly. MEGAHIT v0.1.4 – Large and Complex Metagenomics Asse...2688 days ago
Perl Special Vars Quick Reference
...S} Current value of regexp debugging flags. See use re 'debug'; ${^RE_TRIE_MAXBUF} Control memory allocations for RE optimizations for large alternations. Encoding...2646 days ago
Awesome perl frameworks, libraries and software - PART 1
...h/mojo - Mojolicious - Perl real-time web framework petdance/ack2 - ack 2.0 is a greplike tool optimized for programmers searching large heterogeneous trees of source...2491 days ago
Single Cell RNAseq data analysis tutorial !!
...eplaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large population of input cells Us...2353 days ago
Bioinformatics Web Application Development with Perl
... framework is a flexible and powerful system for building small to large web apps. It uses the Mo...s for smaller sites and applications, though good programmers can build larger things with it. The first v...2324 days ago
List of visualization tools for network biology
...sat.ulb.ac.be/neat/ Ondex Data integration and visualization of large networks http://www.ondex.or....on.ca/osprey/servlet/Index Pajek Analysis and visualization of large networks and social network a...2290 days ago