Results for "Libraries"
Blogs
...ourceCache$ cd /SourceCacheGet and unpack the required Jpeg-6b and GD libraries:Download Jpeg-6b (http://code...re it installs most of the software that it installs. This means your libraries and headers for libgd will be...3939 days ago
BBTools for bioinformatician !
...CTTG Note: For BBMerge with micro-RNA, you need to add the flag mininsert=17. The default is 35, which is too long for micro-RNA libraries. Identifying adapter...2270 days ago
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Bookmarks
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
1092 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinfo...ersion between file formats. The Bio::ToolBox libraries provide a unified, abstracted...e data files. They rely on BioPerl SeqFeature libraries and related adaptors to acces...
2997 days ago
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Pages
Bio++ : C Language libraries for your biological need
...r you. Bio++ 1.9.0 is available with amazing libraries that can help you to solve ap...logical programmers are ready to use the C++ libraries of biology. These library are...from a file or command lineetc. Some of the libraries are under development that wi...3947 days ago
Genome Assembly Tools and Software - PART2 !!
...used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate ins...2685 days ago
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Top-level pages
- ...to analyse and explore the hidden information. This tutorial is aimed to introduce you new biological programming languages with their packages/libraries, and assist in your scripting...
3947 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nalyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Aird et al, Genome Biology 1...5, 2009 PubMedCentral Cost-effective, high-throughput DNA sequencing libraries for multiplexed target captur...3779 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...that target single nucleotide polymorphisms (SNPs). More than 18,000 of these markers were discovered through sequencing reduced representation libraries with the Illumina Genome Anal...3896 days ago
- ...NGS v3.1 including support for handling well known and customised UMI libraries, QC metrics, consensus alignm...cy variant calling in cfDNA sample will be presented. UMI-tagged NGS libraries allow, ultra-sensitive detect...
2370 days ago
Opportunity posts
Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
...I MUMBAI – 410210 No. ACTREC/Advt./ 72 /2013 WALK IN INTERVIEW 1. JRF* Genome-wide RNAi screen with human pooled tyrosine kinase shRNA libraries in head and neck squamous cal...3841 days ago
Internship in Computational Biology
...ripting language (Perl, Python...), a basic knowledge of MySQL or any relational database management system. Knowledge in biological programming libraries (BioPython, BioPerl, BioRuby....3530 days ago
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Bio-Scripts
- ...t::Long Catalyst::Runtime Catalyst::Devel List::Util Test::XML::Simple Test::XPath IO::String Bio::Perl version # Set $PERL5LIB to find these libraries, and set $PATH to use this Pe...
2143 days ago
Install Parrot Virtual Machine !
...done. init::optimize - Enable optimization..................................no. inter::shlibs - Determine flags for building shared libraries.....-fPIC. inter::libparrot...1536 days ago
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Polls
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3526 days ago
Tags
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your MySQL configuration and make recommendations for increased performance and stability. kraih/mojo - Mojolicious - Perl...Tags: Awesome, perl, frameworks, libraries, software
2489 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want to determi...Tags: BBSplit, Read, Binning, Tool, Metagenomes, Contaminated, Libraries
2314 days ago
Comments
Comment on "REAPR: a universal tool for genome assembly evaluation"
...a list of all “perfect” reads. This is reads that have a perfect map to the reference. Reapr is finicky though, and can’t use libraries with different read lengths,...1336 days ago
- ...programming tasks. 8. Extensible: In addition to the standard libraries there are extensive collections of freely available add-on modules, libraries, frameworks, and tool-kits.Th...
2518 days ago
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