Results for "Linux Filesystem"
Bio-Scripts
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it...cluster-1.1.25-cp37-cp37m-manylinux1_x86_64.whl (154 kB) |█...pandas-0.24.1-cp37-cp37m-manylinux1_x86_64.whl (10.1 MB) |...wisolver-1.3.1-cp37-cp37m-manylinux1_x86_64.whl (1.1 MB) |█...ename=PyYAML-5.3.1-cp37-cp37m-linux_x86_...1207 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjh...TRUE -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (fo...") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so...SvgWriter.cpp:1: /usr/include/x86_64-linux-gnu/...1207 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'695 days ago
Steps to install Conda on Linux !
Download the installer: Miniconda installer for Linux. ( https://docs.conda.io/en/latest/miniconda.html#linux-installers ) Anaconda installer for Linux. ( https://www....com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-x86_...1186 days ago
Conda command to install checkV
(mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Col...be INSTALLED: biopython conda-forge/linux-64::biopython-1.79-py36h8f6f2f9_0 boost conda-forge/linux-64::...639 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initial...
1152 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1058 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment:...
1058 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1058 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ sudo apt...libtool libtsan0 libubsan0 linux-libc-dev m4 manpages-dev pkg-...libtool libtsan0 libubsan0 linux-libc-dev m4 manpages-dev pkg-...previously unselected package linux-libc-dev:amd64. Preparing to...+git161113-4) ... Setting up linux-libc...
1058 days ago
