Results for "Linux Server"
Bio-Scripts
(JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve...1213 days ago
- (JitMetaENV) ➜ wgd git:(master) pip install --user ERROR: You must give...ing fastcluster-1.1.25-cp36-cp36m-manylinux1_x86_64.whl (153 kB) |█...nloading pandas-0.24.1-cp36-cp36m-manylinux1_x86_64.whl (10.1 MB) |...ng scikit_learn-0.24.0-cp36-cp36m-manylinux2...
1206 days ago
- #GffRead: GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and m...packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main gffread bioconda/linux-...
1202 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it...cluster-1.1.25-cp37-cp37m-manylinux1_x86_64.whl (154 kB) |█...pandas-0.24.1-cp37-cp37m-manylinux1_x86_64.whl (10.1 MB) |...wisolver-1.3.1-cp37-cp37m-manylinux1_x86_64.whl (1.1 MB) |█...ename=PyYAML-5.3.1-cp37-cp37m-linux_...1202 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjh...TRUE -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (fo...") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so...SvgWriter.cpp:1: /usr/include/x86_64-linux-...1202 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'690 days ago
Steps to install Conda on Linux !
Download the installer: Miniconda installer for Linux. ( https://docs.conda.io/en/latest/miniconda.html#linux-installers ) Anaconda installer for Linux. ( https://www.a....com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-...1181 days ago
Conda command to install checkV
(mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Coll...l be INSTALLED: biopython conda-forge/linux-64::biopython-1.79-py36h8f6f2f9_0 boost conda-forge/linux-...634 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initia...
1147 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1053 days ago
