Results for "Local"
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...Jit@jit.aber SvABA: Structural variation and indel detection by local assemblyBy Jit 6 days ago SvABAStructuralvariationindeldetectionlocalassembly github.com -...1507 days ago
- ...1.513GB 1.513GB (100%) Local Volumes 0...0 0B 0B Local Volumes 0...Cgroup Driver: cgroupfs Plugins: Volume: local Network: bridge host ipvla...
1505 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solv...
1212 days ago
- ...ed: scipy>=1.2 in /home/urbe/.local/lib/python3.6/site-packages (...ed: six>=1.5.2 in /home/urbe/.local/lib/python3.6/site-packages (...d: pytz>=2011k in /home/urbe/.local/lib/python3.6/site-packages (...is installed in '/home/urbe/.local/bin' which is not on PATH....
1204 days ago
Perl script to run awk inside perl
#!/usr/local/bin/perl eval 'exec /usr/local/bin/perl -S $0 ${1+"$@"}' if $running_under_some_shell; # this emulates #! processing on NIH machines. # (remove #! line above if indigesti...1159 days ago
- # Make sure that Java v8+ is installed: java -version # Install Nextflow curl -fsSL get.nextflow.io | bash # Add Nextflow binary to your PATH: mv nextflow ~/bin/ # OR system-wide installation: # sudo mv nextflow /usr/local/bin
959 days ago
Perl script to rename the fasta file !
#Script #1 #!/usr/bin/perl -w use strict; #USAGE #perl extractPattern.pl kmerfasta > uniref100_result_broad my %kHash; local $/ = '>'; my $infile2 = "$ARGV[0]"; # Kmer fasta open( FH2, '854 days ago
Script to rapid genome clustering based on pairwise ANI
...n -query -db -outfmt '6 std qlen slen' -max_target_seqs 10000 -perc_identity 90 -o -num_threads 32 Next, calculate pairwise ANI by combining local alignments between sequence p...631 days ago
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