BOL: Results for "MAF"

Results for "MAF"

- Radha Agarkar@radhaagarkar
mafTools
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
2910 days ago
- Jit@jit.aber
MafTools
maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With adva...cs, Mutation Annotation Format (MAF) is being widley accepted and...analyze, annotate and visualize MAF files in an efficient manner...ayakonda, A. and H.P. Koeffler, Maftools: Efficient analysis, vis...
2639 days ago
+7 more Bookmarks

- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
...ntify genes that were mutated more often than expected Input: mutations.maf, coverage.txt, covariates.txt...ast update: April 2015 Input: tal-delimited file Output: tab-delimited MAF PANTHER Description:...
2913 days ago
- Neelam Jha@neelam
Awesome perl frameworks, libraries and software - PART 1
...Linter briandfoy/PerlPowerTools - Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each variant is annota...
2493 days ago

- Jitendra Narayan@admin
MafFilter: a highly flexible and extensible multiple genome alignment files processor http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904536/ #MultipleGenomeAlignment #MAF #Genome #Alignment
3558 days ago
- Jit@jit.aber
Convert MAF file format http://last.cbrc.jp/doc/maf-convert.html #MAF #Convert #Format
2556 days ago
+2 more Wire posts

- BioStar@biostar
Identify genome-wide synteny with LASTZ alignment
...chain.filter.tnet.synnet.axt chr1.chain.filter.tnet.synnet.Sort.axt axtToMaf chr1.chain.filter.tnet.synnet...sizes -tPrefix=target. -qPrefix=query. chr1.chain.filter.tnet.synnet.axt.maf Step 3: Get syntenic marke...
521 days ago

- BioStar@biostar
Comment on "Mugsy: multiple whole genome alignment tool"
...xample will align three genomes and output a file /data/output/mygenomes.maf. The --directory setting is a...hould not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of Mugsy...
1290 days ago