2917 days ago
2646 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ntify genes that were mutated more often than expected Input: mutations.maf, coverage.txt, covariates.txt...ast update: April 2015 Input: tal-delimited file Output: tab-delimited MAF PANTHER Description:...2920 days ago
Awesome perl frameworks, libraries and software - PART 1
...Linter briandfoy/PerlPowerTools - Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each variant is annota...2500 days ago
Identify genome-wide synteny with LASTZ alignment
...chain.filter.tnet.synnet.axt chr1.chain.filter.tnet.synnet.Sort.axt axtToMaf chr1.chain.filter.tnet.synnet...sizes -tPrefix=target. -qPrefix=query. chr1.chain.filter.tnet.synnet.axt.maf Step 3: Get syntenic marke...528 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...xample will align three genomes and output a file /data/output/mygenomes.maf. The --directory setting is a...hould not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of Mugsy...1297 days ago