Results for "Maf"
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Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.2916 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With adva...cs, Mutation Annotation Format (MAF) is being widley accepted and...analyze, annotate and visualize MAF files in an efficient manner...ayakonda, A. and H.P. Koeffler, Maftools: Efficient analysis, vis...
2645 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...ntify genes that were mutated more often than expected Input: mutations.maf, coverage.txt, covariates.txt...ast update: April 2015 Input: tal-delimited file Output: tab-delimited MAF PANTHER Description:...2919 days ago
Awesome perl frameworks, libraries and software - PART 1
...Linter briandfoy/PerlPowerTools - Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each variant is annota...2500 days ago
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Bio-Scripts
Identify genome-wide synteny with LASTZ alignment
...chain.filter.tnet.synnet.axt chr1.chain.filter.tnet.synnet.Sort.axt axtToMaf chr1.chain.filter.tnet.synnet...sizes -tPrefix=target. -qPrefix=query. chr1.chain.filter.tnet.synnet.axt.maf Step 3: Get syntenic marke...528 days ago
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Comment on "Mugsy: multiple whole genome alignment tool"
...xample will align three genomes and output a file /data/output/mygenomes.maf. The --directory setting is a...hould not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of Mugsy...1296 days ago
