2157 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data::Dumper; # individuals in the population my $popsize = 1024; # a good...2385 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod doc...y $postTrim = min($sLen - $sEnd, $lLen - $lEnd); ## Only continue on if there's a good...2321 days ago
2164 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into...LE_THRESHOLD] [--extra_middle_trim_good_side EXTRA_MIDDLE_TRIM_GOOD_SI...(default: 85.0) --extra_middle_trim_good...2119 days ago
1216 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by B...ltiples of 2 from 32-62, multiples of 3 from 63-93, etc. P...ltaonly=t (mdo) Only mark bad bases adjacent to good bases. meo=t (...989 days ago