Results for "Match"
Blogs
How to Prepare your Bioinformatics CV ?
...mate, employers are looking to consistently improve on productivity and match a prospective employee's skil...nsider what examples (interests/ hobbies) you can give to show that you match the selection criteria. If th...3373 days ago
Bioinformatics PhDs - Cover Letter
...sider your candidacy. At a minimum, it should contain a clear statement of your research and teaching interests, and how your qualifications match the requirements of the job d...3365 days ago
- +6 more Blogs
Bookmarks
- Bioinformatics require some match skills, therefore I decided to provide this wonderful math eBooks links to the BOL community. Please add ur links/bookmarks in comment section.
3796 days ago
- ...asis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineage prob...only query sequences, but also their database match partners to be evaluated for...
2874 days ago
- +7 more Bookmarks
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3867 days ago
Pages
Find certain files/documents in Linux OS
...used command in Linux sytems. Find command used to search and locate list of files and directories based on conditions you specify for files that match the arguments. Find can be us...3681 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...extract site-specific spatial patterns of split pockets as templates to match those from unbound structures...to screen the Protein Data Bank (PDB) for finding ligand binding sites matching your protein structure or...3744 days ago
Perl one-liner for bioinformatician !!!
...in a fileperl -pe '$_ = ++$a." $_" if /regex/' #Number only lines that match a patternperl -ne 'print ++$a." $_" if /regex/' #Number and print only lines that match a patternperl -ne 'printf "%-...3628 days ago
- +6 more Top-level pages
Wire posts
News
- ...Devices. Several of those included with R use a "filepath" attribute. pmatch() uses hashing in more cases...() function, combining exists() and get() in one call, for efficiency. match.call() gains an envir argumen...
3305 days ago
- BLAST team added a new feature (Max 3' match), shown in Figure 1, to Primer-BLAST that limits the length of 3' exon matches when designing exon-exon sp...
1468 days ago
Fun
What a bioinformatician always dream for ???
...l softwares. Complete, and fully assembled genome of the girl :P A girl/boy with lesser E-values and higher compatibility score. Horoscope Match should be significant (not le...3845 days ago
Bio-Scripts
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){ chomp $line;...2916 days ago
- ...$dna3 = “ATGAAAAAAAAAATGAAAAAAAAAAAATGAAAA”; $pattern = “ATG”; # match pattern to dna1 $m = $dna1 =...pattern/g; print “Was the ATG pattern found in dna1 : $m \n”; # match pattern in dna2 $m2 = $dna...
2909 days ago
- +17 more Bio-Scripts
Tags
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...
Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare
2978 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source code can be downloaded here. If you use E-MEM, please cite: N. Khiste, L. Ilie, E-MEM: Efficient comp...Tags: Bioinformatics, Analysis, Match, Genome, E-MEM
2698 days ago
Comments
Comment on "Basic command-line to run BLAST"
...y used program for searching a database of sequences to find those that match a query sequence. Here are th...nd downloaded. The results include information about the sequences that matched the query sequence, includi...423 days ago
- DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation
1146 days ago
- +3 more Comments
