String graph based genome assembly software and tools !
In graph theory, a string graph is an inters...d reads. The third phase uses paired end and/or mate pair data to build scaffolds from...unts, and the improved use of mate pairs and min-cost flow for s...es based on read coverage and paired-end information, resulting...2342 days ago
List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub https://cghub.ucsc.edu/ Compre...ger.ac.uk Largest somatic mutation database; genome sequ...ov/ Visualization; gene mutation and variation; automated analysis pipeline GDSC http://www...2333 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell can now generat...2333 days ago
BBTools for bioinformatician !
...eads=10000 You can specify paired reads, an insert size distr...rage stats (region covered by paired-end reads) BBMap h...e saturation curves to assess sequencing depth Code: $ b...ode, once the line hits zero, sequencing more is not useful.In cumulat...2284 days ago
10 NGS services companies around the globe !
The global NGS services market ...is one of the leading players in DNA sequencing and array-based technologies,...ny. The company provides DNA and RNA sequencing and bioservices solutions to...rogen, Inc. provides next generation sequencing services such as whole genome...1272 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for imp...n with k-mer count information from raw, short-read sequ...Tobias Marschall)● SQANTI3 – an automated pipeline for the classification of...1005 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...s of tiny parts and read on a sequencing computer in a genome sequencing experiment. Depending o...as described above or “paired end.” Why genome ass...nce this is what the Illumina sequencing pipeline creates. This will h....broadinstitute.org/igv/ Automated and semi automated annotation tool...1217 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener...s/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplifying sequencing libraries. Quail, M. a et al....1060 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • &nb...space-saving solution for raw sequencing data, Bioinformatics,&nb...M Experimental compressor of sequencing reads. • Gra...obust mapping of whole genome sequencing data, Poster at The Biol...876 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for...onflict. American Zoologist. 14(1):249-264. Sexual Selection 1. Zahavi, A. 1975. Mate selec...690 days ago