BBTools for bioinformatician !
...errors=false out=2snps.fastq reads=1000 minlength=18 maxlength=55 seed=5 [As of BBmap v. 36.59] rendomreads.sh gains the ability to simulate metagenomes. coverage=X will automat...2267 days ago
10 NGS services companies around the globe !
...eas. It also provides next generation sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcriptomes, metagenomes, regulomes, pre-sequencing, N...1256 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assembli...2947 days ago
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821 days ago
Genome Assembly Tools and Software - PART2 !!
...bly. ISSAKE – Short Read Sequence AssemblyiSSAKE (immuno-SSAKE) is a sequencing approach and assembly software for profiling T-cell metagenomes using short reads from the ma...2682 days ago
Awesome perl frameworks, libraries and software - PART 4
...mages From Eye-Fi Cards kirei/fpdns - Net::DNS::Fingerprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and metagenomes chrispix/symbolicatecrash-fi...2491 days ago
Genome Assembly Tools and Software - PART1 !!
...an understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled...ets MetaCAA is a sequence-assembly tool specifically intended for metagenomes. Contiguity 1.0.4 &ndash...2682 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a gen...2311 days ago
Tadpole is 250x faster than SPADes assembler !
...tig. It is recommended that mce=1 for low-depth metagenomes. mincountretain=0 (mincr)...ter assemblies for low-depth data, but they are very slow for large metagenomes. Overlap parameters (for o...973 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarsh...Tags: Recovery, complete, genomes, metagenomes
2318 days ago
Tags: CheckM, Assessing, quality, microbial, genomes, recovered, isolates, single, cells, metagenomes, Validation
2171 days ago