Results for "Microbial ecology"
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Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.me...docs.google.com/document/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI Microbi...3502 days ago
- RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Na...this tutorial we carry out de novo assembly of a microbial genome. We have also written...f using Galaxy to carry out de novo assembly of a microbi...
3667 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive unde...ier to entry for many who may be interested in microbial genomics. The objective of th...n environmental sample (a swab) to a published microbi...3571 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-thro...t to a reference database containing microbial and viral protein sequences....lete genomes from NCBI RefSeq or the microbial subset of the non-redundant p...h a protein database comprising 4821 microbi...
2883 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak...tion tool (written in very vanilla C). It can analyze an entire microbi...2699 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbi...
2632 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant ca...t and visualization of thousands of intraspecific microbi...
2665 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by diff...
2634 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by diff...
2624 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visua...most comprehensive genomic database integrated with the largest collection of microbi...2560 days ago
