3858 days ago
CoronaVIR: Computational Resources on Novel Coronavirus (SARS-CoV-2 or COVID-19)
...on our knowledge and expertise, we are also proposing potential diagnostics primers, peptide and RNA based vaccine candidates and potential drug molecules. These are predicted candidat...1102 days ago
2355 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instrumen...2347 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch...2061 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, mol...1930 days ago
1552 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
...ean the lack of interaction. Indeed, recent studies, both computational and experimental, highlighted the promiscuity of both proteins and small molecules: many drugs have side effects...1492 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
...is to predict the binding complex structure between two nucleic acid molecules through a hierarchical dockin...required to provide the three-dimensional (3D) structures of the two molecules to be docked. ...1428 days ago
GROMACS: a versatile package to perform molecular dynamics
...i.e simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is able to work with many biochemical molecules like proteins, lipids and nuc...1365 days ago