2153 days ago
List of motif discovery tools !
...tein motif (Prosite and Pfam) in a protein sequence. MultiBind -- Multiple Alignment of Protein Binding...nteraction Search Find homologous protein-protein interactions across multiple species. PPSearch Searc...1986 days ago
Understanding reads mapping and flags !
...hat is considered the representative alignment. One read can align to multiple positions, we can find one al...Alignment and Secondary Alignment: A read may map ambiguously to multiple locations, e.g. due to repeat...1830 days ago
1829 days ago
New Machine Learning Packages in R
...ware library for automated machine learning. See README for an example. MTPS v0.1.9: Implements functions to predict simultaneous multiple outcomes based on revised sta...1493 days ago
Illumina based assembly pipeline steps !
...ols) Genome-wide and amplicon coverage QC plots (mosdepth) Choice of multiple variant calling and consensus...vo assembly Primer trimming (Cutadapt; amplicon data only) Choice of multiple assembly tools (SPAdes || Uni...870 days ago
Useful Bioinformatics Analysis Tools !
...–23, CoMSA Compressor of multiple sequence alignments of protei...sp;CoMSA: compression of protein multiple sequence alignment files,&nbs...11; 27(6):860–862, FAMSA Multiple sequence alignment designed f...wing queries for a collection of multiple genome sequences. •&nbs...856 days ago
List of comparative genomics resources !
...owser -- A Tool for Visualizing and Accessing Data from Comparisons of Multiple Vertebrate Genomes Access to...otozoan genomes Database hosting genomics and post-genomics data from multiple protozoans. Pseudofam --...670 days ago
662 days ago
Calculate the significance of the difference between two trends
...pare two groups (non-parametric) ANOVA aov() or anova() Compare multiple groups (parametric) Kruskal-Wallis kruskal.test() Compare multiple groups (non-parametric)...411 days ago