1549 days ago
1464 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
...ser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own...1457 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/1457 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targe...1362 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a user can easily tailor the run to their project needs. The a...1328 days ago
URMAP, an ultra-fast read mapper
...which are difficult to map and may therefore pose an unrealistically easy challenge to read mappers and variant callers. More at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7...1289 days ago
IVA: accurate de novo assembly of RNA virus genomes
...mentation: The software runs under Linux, has the GPLv3 licence and is freely available from http://sanger-pathogens.github.io/iva https://pubmed.ncbi.nlm.nih.gov/25725497/1052 days ago
978 days ago
968 days ago