1952 days ago
1952 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontol...1943 days ago
Genome assembly forensics: finding the elusive mis-assembly
...tware described is compatible with common assembly formats and is released, open-source, at http://amos.sourceforge.net. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397507/&...1937 days ago
1725 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
...orient the contigs. The updated version of RePS incorporates some of the ideas introduced by Phusion on clustering More at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC186573/1595 days ago
DMINDA2: an integrated web server for DNA motif identification and analyses
DMINDA (DNA motif identification and analyses) is an integrated web server for DNA motif identification and analyses More at http://bmbl.sdstate.edu/DMINDA2/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086085/1565 days ago
1556 days ago
1555 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/1463 days ago