Results for "New Genome"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B...012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome Res. 22, 557-67 (2012). KMC:...1039 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read...; optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...al variant screenshots with annotation tracks (ASCIIGenome) Intersect variants acro...869 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads fro...CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE,...Compressor of collections of genome sequences. • ...obust relative compression of genomes with random access, Bio...Compressor of collections of genomes given in Variant Call Format...856 days ago
List of comparative genomics resources !
...-- rapid access database for new Drosophila species genomes Search and compare 12 new and old Drosophila genomes....risons of Multiple Vertebrate Genomes Access to whole genome alig...ase dedicated to the study of genome conservation. OMA -- the...670 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...The causes of evolution. Longmans. New York. (esp. Ch. IV). 2....dandam et al. 2001. A map of human genome sequence variation contai...draft sequence of the Neandertal genome. Science 328: 710-722. Qua...ntitative Traits From Fixation of New Mutations." Proceedings of the N...669 days ago
Must read paper and books in evolution biology !
...The causes of evolution. Longmans. New York. (esp. Ch. IV). 2....dandam et al. 2001. A map of human genome sequence variation contai...draft sequence of the Neandertal genome. Science 328: 710-722. Qua...ntitative Traits From Fixation of New Mutations." Proceedings of the N...570 days ago
Common methods to discover tandem repeats
Tandem repeats are DN...epeated in a contiguous manner in the genome. These sequences are often us...ods for discovering tandem repeats in genomes: Tandem Repeat Finder:...ehensively identify tandem repeats in genomes....416 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many ty...o follow for mapping reads to a genome: Choose a read mapper: T...stion. Index the reference genome: Before mapping reads, the re...fying the input data, reference genome, and output file format....416 days ago
Steps to find palindrome in genomes !
Palindromes a...rward. They can be present in genomes and have various biological...or discovering palindromes in genomes: Direct sequence search...tify palindromic regions in a genome. It involves plotting the gen...By mapping these reads to the genome, palindromic regions can be i...416 days ago
Entire Human Genome Sequencing !
Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and per...: https://mynucleus.com/ https://myome.com/ https://nebula.org/whole-genome-sequencing-dna-test/26 days ago
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