Perl one-liner for beginners !
...;' columnFileWithTabs.txt > justSecondColumn.txt One-Liner: Sort lines by their length...rt {length $a <=> length $b} <>' textFile One-Liner: Print second column, unless...1397 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs o...3926 days ago
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Most Commonly used Awk by Bioinformatician
...want to generate something on the fly. You can use awk to make a neat one-liner for some quick job in the ter....html http://www.grymoire.com/Unix/Awk.html A famous list of useful one-liners - though they're short, many...3928 days ago
Perl one-liner for bioinformatician !!!
...of Perl onliner is extremely helpful. Perl one-liners are small and awesome Perl p...bunch of files at once, and many more. Perl one-liners will make you the shell warr...gspot.com/2013/08/a-selection-of-useful-bash-one-liners.html http://biowize.wordpre...3644 days ago
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Samtools commands for bioinformatician !
## count mapped reads samtools view -c -F 260 mapping_file.bam ### converting sam file into fasta samtools fasta reads_mapped.sam > reads.fasta ### converting...1619 days ago
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Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"1251 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Some of the commonly used bioinformatics one-liner by Stephen Turner @ https://github.com/stephenturner/oneliners3827 days ago