NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at htt...2092 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to...basepairs of a long read are covered with short reads. Availability: Hercules source code is available at https://...2082 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase i...ts show that CoLoRMap compares well with existing hybrid correction methods.The source code of CoLoRMap is freely av...2082 days ago
2081 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produ...2081 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...mized operating system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system ca...wing the user to run the system alongside any other operating system. Source codes for all programs are pr...2080 days ago
2045 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...ndash; and can be subsequently edited. Synima runs quickly on a command line to generate informative and publication quality figures. Synima is open source and freely available from&nbs...2012 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads o...ame input when assembled multiple times with the same or different compute resources. Source code for SKESA is freely avai...1997 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome ampl...the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source folder: https://github.c...1999 days ago