1496 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic...ing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembl...1461 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. Th...pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on ba...1459 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and...tion, and reuse of pangenome variation graphs....1341 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can a...lies of quality competitive with the best assemblers. It also introduces a new graph binning algorithm and achieve...1240 days ago
1199 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs i...long reads and/or Hi-C data. As GraphUnzip only connects sequences...dy had a potential link based on overlaps, it yields high-quality ga...To demonstrate the efficiency of GraphUnzip, we tested it on a simul...1196 days ago
JumboDB: tool for de Bruijn graph construction
jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error...r a subroutine that translates a set of reads into compressed de Bruijn graph. More at https://github...1004 days ago
1003 days ago
974 days ago