429 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, an...434 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1964 days ago
Comment on "nanofilt: Filtering and trimming of long read sequencing data"
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/2053 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len [I...2136 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nano conference https://publications.nanoporetech.com/2016/06/05/london-calling-talk-sara-goodwin-cshl-rapid-cnv-characterisation-of-clinical-cancer-samples-on-the-oxford-nanopore-minion/2904 days ago
Comment on "Does anyone have Nanopore latest updates?"
Check out the Seminar on Oxford Nanopore Sequencing; http://www.baseclear.com/news/Seminar-on-Oxford-Nanopore-Sequencing-Are-you-ready-for-the-challenges-_90_27.html2909 days ago
Comment on "Does anyone have Nanopore latest updates?"
Yesterday, in his keynote address to the company’s user group conference in London, CTO Clive Brown announced the development of a new smartphone-powered nanopore sequ...2911 days ago
Comment on "Does anyone have Nanopore latest updates?"
Researchers in Canada and the U.K. have for the first time sequenced and assembled de novo the full genome of a living organism, the bacteria Escherichia Coli, using Oxford...3259 days ago
Comment on "Does anyone have Nanopore latest updates?"
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION http://biorxiv.org/content/early/2015/05/20/019281.full-text.pdf+html Additional tools for analyzing Oxford Nanopore minION data by John Urban https://github.com/JohnUrban/poreminion3285 days ago