Results for "PE"
Users
About me: ...breakpoint and amniotes evolution. I (We) develop certain computational pipeline, and algorithms to harnes...al data (genomes, epigenomes, transcriptomes, proteomes, etc.) to answer specific biological questions per...Skills: PerlSkills: BioPerl5 days ago
- Skills: Perl
585 days ago
- +70 more Users
Blogs
Five unique traits of effective computational biologist
...s well as biological skill, experience, and knowledge to produ...echnical skills, and have an open mind to sources of knowledge...The computational biologist spends most of the time in from o...great biological programmers operating at mediocre levels beca...3945 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...r you need to install several perl modules and dependencies. Installing Perl modu...t imagine chasing all these dependencies one-by-one, thinking...yDownloading Packages:(1/5): perl-ExtUtils-ParseXS-2.18-31.fc...following method to install a Perl module using cpan:# perl -M...3945 days ago
- +109 more Blogs
Bookmarks
- Nice step wide information on perl module installation.
3945 days ago
Should you get sequenced? Not all bad genes predict disease
“What we really don’t know yet is whether the predictive aspects of the genome are going to turn out to be beneficial or potentially harmful” “As we roll ou...3897 days ago
- +907 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly...3948 days ago
Bioinformatics approach to Boar Taint
...to >10X average coverage. Short reads generated from these samples mapped to Sus Scrofa vers...lity, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will b...3784 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
...ful tools and was easy to use, whereas SPSS is for non-programmers and R need programming skills. I am wondering what other people think is best? or there might not be one specific language but a few that...3947 days ago
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3946 days ago
- +5 more Discussion topics
Pages
Bio++ : C Language libraries for your biological need
...s widely distributed with an Operating System (Unix) that was...ennis Ritchie writes in his paper, "The Development of the C L...invertabrates)Amino acids properties: volume, polarity and ch...population genetics software.Specific containers for polymorph...3943 days ago
- ...anced functional programming with imperative programming Ruby is a...ge that combines syntax inspired by Perl with Smalltalk-like feature...oto. It was influenced primarily by Perl, Smalltalk, Eiffel, and Lis...ed language. There is currently no specification of the Ruby languag...
3942 days ago
- +33 more Pages
Top-level pages
- ...ights as well as to create a global perspective from which unifying prin...red in the genetic code, but also experimental results from various...ematic gene–knock–out experiments, and metabolic pathway...understanding its function. Many properties of the 3D structure cann...
3942 days ago
- ...desire to explore and understand biological machanism at genomic level, speed up the genomic sequencing p...ects. In the fast growing HT-NGS technologies, the main challenge is to cope with the analysis of vast pro...
3943 days ago
- +105 more Top-level pages
Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3947 days ago
- ...ence series, organized regularly by members from the R community: useR! - providing a forum to the R user community - and DSC - a platform for developers of statistical software. R...
3947 days ago
- +174 more News
Opportunity posts
- ...-L) for applicants interested in performing high-quality research...tober 1, 2013 until 30.09.2016. The period of employment is governed...ication approach are arranged with specialized courses that prepare...ocuments summarizing their academic performance, and a statement of...
3943 days ago
- ...long with list of publications and duration of experience on the e-mail ID(s) as...sociate (NGS). No. of Position(s) : One Stipend: Rs.22,000/- P.M. (consolid...ology /Virology /Botany. Desirable: Working experience in the area of plant vi...
3939 days ago
- +551 more Opportunity posts
ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...s. We seek to accurately predict links, such as specific molecular interactions,...is work is supported through the development of open-source biological pathway an...Cellular network evolution Detection of cell type and stage active biological p...3943 days ago
- ...ility. The genome-wide responses studied with the "omics" techniques (transcriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are proce...
3914 days ago
- +101 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
...Sequence aapke pass hai. BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte...3914 days ago
Perl Poem: Parse it in both Perl and English!
...dowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper o...es: Computer Poetry Meets the Perl Programming Language". (The...length(of-days) # listen (a perl poem)# Sharon Hopkins# rev....3914 days ago
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Video
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3899 days ago
Bioinformatics Algorithms (Part 1) with Pavel Pevzner, Phillip E. C. Compeau,
The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.3865 days ago
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Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; #assign strings to variables my $DNA = "GATTACACAT"; my $polyA = "AAAA"; #concatenate two strings my $modifiedDNA = $D...
2912 days ago
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the lengt...2912 days ago
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Tryst
Interview with a bioinformatician series ...
The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these answers will prove useful to others in the field,...3412 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...rivate unified solutions for specific biological problems, lea...ill be revealed within the scope of the project. The molecular...mparison of high-throughput experimental data in an integrated...e output(s) of the employed pipelines/packages/tools. &nb...2357 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common...3898 days ago
Perl(Practical Extraction and Reporting Language) i...ose, interpreted, dynamic programming languages. Perl was originally developed by Larry Wall in 1987 as a g...c string handlings. This group is dedicated to perl lovers. Who know .. you can...3948 days ago
- +11 more Groups
Tags
How to extract 50% of the reads?
I would like to extract a subset of PE reads (50%) and store them in seperate files. It should be in both way "split by middle" or "random". Is there any way to achieve it?Tags: Reads, NGS, PE, Extract
2812 days ago
What are the best way to merge paired end reads ?
I want to merge PE reads. Can you please suggest me good tools.Tags: Merge, Reads, PE, NGS
2337 days ago
- +4 more Tags
Comments
Comment on "Benchmarking Perl Module !"
...Benchmarking a Perl module involves measuring the performance of the module in ter...quick guide to benchmarking a Perl module using the Benchmark...ses the functionality of your Perl module. This program should...e taken, and the average time per iteration. You can use these...410 days ago
Comment on "Short-read assembly using Spades !"
...ge number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is...ng errors or low-quality bases. This step can be performed using various tools su...another round of assembly. This process can be repeated until a satisfactory asse...410 days ago
- +339 more Comments
