Results for "PSI Blast"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2604 days ago
Basic command-line to run BLAST
The goal of this tutorial...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2238 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star...for teaching bioinformatics. These include animated tutorials on topicssuch as BLAST, finding mutations in a prote...2186 days ago
Installing Bandage on Ubunty !
The following instructions successfully build Bandage (...Bandage git:(master) lsBandage.pro BandageTests.pro blast build_scripts command_line CO...boutdialog.h/home/urbe/anaconda3/bin/uic ui/enteroneblastquerydialog.ui -o ui_enteroneb...2182 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD dete...wgd depends on the following software BLASTMCLMUSCLE/MAFFT/PRANKPAMLPhyML...onda conda create -n wgd python=3.5 blast mcl muscle mafft prank paml f...spon_cds.out/Sspon.v20190103.cds.fasta.blast.tsv.mcl Sspon.v20190103.cds.f...1149 days ago
Illumina based assembly pipeline steps !
...; default for metagenomics data) Variant annotation (SnpEff, SnpSift) Consensus assessment repo...oice of multiple assembly tools (SPAdes || Unicycler || minia) Blast to reference genome (blastn) Contiguate assembly (ABACA...870 days ago
- Downloading 16S rRNA databases can be crucial for various bioinformatics analyses,...ware tools. NCBI 16s RNA database location ftp://ftp.ncbi.nih.gov/blast/db/16SMicrobial.tar.gz
5 days ago
