Results for "Paired-End"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bio...3705 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH)...
3937 days ago
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Bookmarks
- Enzyme Portal- To look for information about the biology of a protein with enzymatic activity. The enzyme portal integrates many resources, most of them hosted by E...
3894 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also sup...1216 days ago
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Pages
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis, c...3701 days ago
Genome Assembly Tools and Software - PART2 !!
...n (quality scores) and supports paired-end reads or bisulfite-treated re...parative genome information and paired-end reads. DISCOVAR 51750 &ndash...ing the distance information of paired-end and/or matepair data, SSPACE...p;is an assembler for mate pair/paired-end reads from high throughput se...2683 days ago
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Top-level pages
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into info...
3944 days ago
Bioinformatics Companies in India
Following are the list of top 30 bioinformatics companies in India. The companies name order does not follow any specific pattern. 1. Accelrys Software Solution Pvt Ltd....3923 days ago
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Wire posts
News
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simp...3948 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowled...3917 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to ana...3946 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom Research Foundation (SGRF) and Institute of Genomics and Integrative Biology (IGIB)...3920 days ago
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ResearchLabs posts
- ...00 Genomes Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (or read pair analysi...
2990 days ago
- TheLab seek to understand the genetic factors contributing to genomic variation and phenotypic diversity. To this end, we employ molecular and bioinformatic tools to stu...
2989 days ago
Video
How DNA is Packaged (Advanced)
Each chromosome consists of one continuous thread-like molecule of DNA coiled tightly around proteins, and contains a portion of the 6,400,000,000 basepairs (DNA building...3874 days ago
Bionics, Transhumanism, and the end of Evolution (Full Documentary)
Bionics, Transhumanism, and the end of Evolution (Full Documentary) ....3870 days ago
Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-get install...
2141 days ago
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the leng...2914 days ago
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Tags
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam ...Tags: Frequent, Paired-end, reads, (PE 2x100), mapping, command, lines
2179 days ago
Comments
Comment on "Short-read assembly using Spades !"
...n FASTQ format, which contains the sequencing reads. If the reads are paired-end, they should be provided in s...astq and read2.fastq with the names of the input files containing the paired-end reads, and <output_dir>...418 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic framework f...1140 days ago
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