Results for "Parallel Processing"
Top-level pages
...s. Algorithms are used for calculation, data processing, and many other fields.Each...lying only the logic component. Serial or parallel Algorithms are usually dis...e. This is a serial algorithm, as opposed to parallel algorithms, which take advantag...3947 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...malian genomes from massively parallel sequence data. Gnerre et al,..., a pipeline to use the ABySS parallel assembler for de novo transcr...Text Experimental design, preprocessing, normalization and differenti...and meiotic maps by massively parallel DNA sequencing: spotted gar, an...3780 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of the...ChIP-Seq Pipeline: PICS, rGADEM and MotIV (developer web site) SPP: ChIP-seq processing pipeline SPP Tutorial MACS...3626 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Heli...ssor version is useful for assembling genomes up to 40-50 Mbases in size. The parallel v...3520 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, He...ssor version is useful for assembling genomes up to 40-50 Mbases in size. The parallel v...3243 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different to...ic point mutations in cancer genomes; requires preprocessing of reads (GATK) Input: same...indels-- don’t need to do this type of pre-processing Output: pair of VCF files...2910 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. T...uencing A high-throughput sequencing method which parallelizes the sequencing process, p...nts is formed around the bead/fragment component. Parallel a...
2870 days ago
Genome Assembly Tools and Software - PART1 !!
...scales up to 1024 cores when processing Fish and Yanhuang dataset,...ABySS 1.9.0 – de novo, parallel, paired-end Sequence Assembler...Assemblies CLEAT is a post-processing tool for CLEavage site Analys...ecutables, being developed in parallel streams: cortex_con (primary co...2687 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and s...ion and text alignment scheme that allows for the processing of very long (and possibly no...ground jobs, placing them on multiple queues, and processing them later. perl6/specs ...2490 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED data...veloped in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. N...2333 days ago
