Results for "Parallel Processing"

Bio-Scripts

  • Commands to install Statistics::R module in Ubuntu !

    $ sudo apt-get install libstatistics-r-perl Reading package lists... Done Building d...up r-base (3.4.4-1ubuntu1) ... Setting up libstatistics-r-perl (0.24-1) ... Processing triggers for man-db (2.8.3-2u...

    1525 days ago

  • Setting up autoConTAMPR !

    (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...

    1456 days ago

  • Extract the sequence by IDs !

    #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FASTA/FASTQ)...

    1416 days ago

  • Install prokka using conda !

    (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solv...

    1229 days ago

  • Install wgd cli on linux !

    (JitMetaENV) ➜ wgd git:(master) pip install --user ERROR: You must give at least one...e "pip help install") (JitMetaENV) ➜ wgd git:(master) pip install --user . Processing /home/urbe/sahil_data/novoKor...

    1221 days ago

  • Install htop in elementary/Ubuntu OS !

    neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get ins...top (2.1.0-3) ... Setting up htop (2.1.0-3) ... Processing triggers for desktop-file-uti...23-1ubuntu3.18.04.2+elementary2~ubuntu5.0.1) ... Processing triggers for bamfdaemon (0.5....

    1166 days ago

  • Set up WGD environment using conda !

    #Wgd cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it #depends on a lot of software. wgd depends on the followi...

    1217 days ago

  • Install and set up i-adhore for synteny and wgd analysis ! -- step by step --

    ...ect src/CMakeFiles/i-visualize.dir/parallel.cpp.o [ 37%] Building CXX ob...object src/CMakeFiles/i-adhore.dir/parallel.cpp.o /home/urbe/Tools/i-adh...ome/urbe/anaconda3/envs/wgd/./post_processing -- Installing: /home/urbe/anaconda3/envs/wgd/./post_processing/alignment_plot.pl -- Install...

    1217 days ago

  • Perl script to run awk inside perl

    #!/usr/local/bin/perl eval 'exec /usr/local/bin/perl -S $0 ${1+"$@"}' if $running_under_some_shell; # this emulates #! processing on NIH machines. # (remove #...

    1177 days ago

  • Install R in Linux !

    vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ su...... Setting up r-base-dev (3.4.4-1ubuntu1) ... Processing triggers for bamfdaemon (0.5....building /usr/share/applications/bamf-2.index... Processing triggers for libc-bin (2.27-3...

    1068 days ago