Results for "Point mutation"
Bio-Scripts
Perl script to Mutate a DNA Sequence
#!/usr/local/bin/perl -w # This script randomly mutates the DNA sequence and generates 10 successive mutation results. # While executing t...ate DNA\n\n"; print "HERE ARE THE 10 SUCCESSIVE MUTATIONS:\n\n"; for ($i=0 ; $i < 10...2913 days ago
Implementation of biological random mutation with Perl
#!/usr/bin/perl -w use strict; use warnings; #sequence for a better recog...DNA: \ n \ n"; print "$mutant \ n"; print "motorcycle 10 more successive mutations: \ n"; for ($I=0; $i2899 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System requirements: requires perl and perl module...
2690 days ago
- #!/bin/env perl use strict; use warnings; use Imager::Heatmap; my $hmap = Image...10, # Sigma value of Y-direction ); # @point_datas should be: ( [ x1, y1, weight1 ], [ x2, y2, weight2 ] ... ) my @point_da...
2492 days ago
Genetic Algorithms demonstration with word DNA in Perl
...= 1024; # a good starting point my $dna_length = 512;...mut_rate = 0.01; # the mutation rate my $min_fitness = 0....ion array reference # from this point on, we are working with a new ge...ef, $mut_rate); # apply mutation to the individuals } while (...2369 days ago
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2262 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, d...ain for the environment to update properly. At this point, you should be #able to see a...is available: which pip #It should show a path pointing...2095 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozyg...2050 days ago
