DISTRUCT: a program for the graphical display of population structure
...ficients in the same form as used in "Genetic structure of human populations" Science 298: 2381...us options enable the user to control left-to-right printing order of populations, bottom-to-top printing orde...1866 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Compiler only C...1557 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fasta1557 days ago
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CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
...rs all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolutionary biologists w...1268 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
...er’s computer/browser. VCF2PopTree is compatible with all population browsers including Chrome, Op...en, D. (2019). VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SN...860 days ago
Creating Genetic Maps from GBS data
...xamining their progenies. These kinds of crosses to create specific group of individuals of known ancestry is called as mapping population. Many types of mapping population exist. Here we will use the d...238 days ago
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