Results for "Population Genetics"
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Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Compil...1561 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fasta1561 days ago
- GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bact...presence-absence status of acquired genes is usually confounded by bacterial populati...
1522 days ago
truvari: Structural variant comparison tool for VCFs
Structural variant comparison tool for VCFs Given benchmark and comparsion sets of SVs, calculate the recall, precision, and f-measure. Spiral Genetics Motivation1406 days ago
- VICUNA is a de novo assembly program targeting populations with high mutation rates. It creates a single linear representation of the mixed populati...
1351 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Recipro...gnments to Ka/Ks calculations and synteny. The new R package targets ecology, populati...1272 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the...browser. VCF2PopTree is compatible with all population browsers including Chrome, Op...VCF2PopTree: a client-side software to construct populati...864 days ago
Creating Genetic Maps from GBS data
Genetic map, as the name suggest is simply knowing the relative positions of specific sequences across the ge...specific group of individuals of known ancestry is called as mapping population. Many types of mapping populati...242 days ago
- An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on GitHub: https://github.com/Devashish13/PopulationStructure
43 days ago
A web-based tool for sequence alignment statistics and innovative visualization
...sion will save time and encourage researchersto focus on explaining their findings. It is a simple tool that can be used in conjunction withpopulation genetics software (PDF) AlignStatPlot:...33 days ago
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