EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...identialGene/Construction refers to the combination of classical gene prediction, and more recent gene assembl...The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combin...2187 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2162 days ago
2159 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that ea...2063 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
...perties. The unique characteristics of STRUM is the combination of sequence profiles with low-resolution structure models from protein structure prediction, which helps enhance the robu...2062 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evol...2053 days ago
GenomeThreader: Gene Prediction Software
...omeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a simil...ed by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used...2039 days ago
EGAD: Ultra-fast functional analysis of gene networks
...rks based on the guilt-by-association principle. These allow rapid controlled comparisons and analyses. Two of the core features are: a function prediction algorithm which is fully vect...1967 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...olecular database tools supporting substructure and similarity searches. Our products support also fragment-based virtual screening, bioactivity prediction and data visualization. Molin...1930 days ago
HS3D: Homo Sapiens Splice Sites Dataset
..., Intron and Splice regions extracted from GenBank Rel.123. The aim of this data set is to give standardized material to train and to assess the prediction accuracy of computational app...1421 days ago